PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009768388.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family FAR1
Protein Properties Length: 788aa    MW: 90063.1 Da    PI: 7.9336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009768388.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR171.91.5e-2280162190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+eYA+ +GF +++++s++sk++g++++ +  Cs+ g ++e+ +        r+  +t+Cka+++vk+++dgkw+++++++eHnHe++
  XP_009768388.1  80 SFYKEYARLLGFGITIKASRRSKKSGKFIDVKIACSRFGAKRESGSF-------RSCPKTDCKASVHVKRRQDGKWYIYSFVKEHNHEIC 162
                     5****************************************999888.......9999******************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.1E-2080162IPR004330FAR1 DNA binding domain
PfamPF105514.7E-27245338IPR018289MULE transposase domain
PROSITE profilePS5096610.014525561IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-7536563IPR006564Zinc finger, PMZ-type
PfamPF044341.3E-6538558IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 788 aa     Download sequence    Send to blast
MEIDLELPSG VDTLDVYMGK NAIDDSSQNH AGVEYVKENV DESGDAIGMD VLDVDIIDKG  60
IANNEPQKDM EFETKEAAYS FYKEYARLLG FGITIKASRR SKKSGKFIDV KIACSRFGAK  120
RESGSFRSCP KTDCKASVHV KRRQDGKWYI YSFVKEHNHE ICSDDFYCSV RGRSKQSANV  180
VYQKKGLQLA LNEGDVEVLL DTLALMQAES PNSYYAIDFD KEKRMRNVFW VDAKCRNDYG  240
HFCDVIYLDT YYIRNKYKVP FIPIVGVNHH FQFLLLGCAL VGDETSSTFA WLLRTWLRAV  300
GGQSPRVVIT DDDTSVKEAV EQVFPEARHC FCLSHVMEKV SQDLGNKISK IEDFVNKLKK  360
CMWLPLKEEE FERRWWEMVD TFKLRDDDLI RSLFENRTKW VPVYMRNTFL AALSTVERSE  420
SVSSSFERYI SSDTTFKEFN DGYKLFVHDK YEEEAKTDIE TRHRPPTIKT LSPYEKQMST  480
VYTNSLFMKF QAEVVGVAAC TVLNDGEEGT EKLYRVKDRD KNQSFMVSWR GRESYIVCSC  540
RSFEYIGILC RHAITVLQVN GVPNIPLVYI LKRWTREAKI KGRACRISST PCYRIQRLND  600
LCKLSAKFGE VGSLSQETYE SAVFAIQAAM QDCINVNNSV KSALVSNISS SQCNPNIDEE  660
IQGGSMAKSS KRKKVQKKRK VQYNSEVLST RIQDNSLQMD QSNSKMPTNE DAFLAQRHVQ  720
GMDPGSRVAT IDGHYAHHSI HGLGRLSSFS MLRDNYYSNH QASHRVLGNL NYISAHGGHY  780
SPLSFQGL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009768388.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 2-like isoform X3
TrEMBLK4CEI60.0K4CEI6_SOLLC; Uncharacterized protein
STRINGSolyc07g043260.2.10.0(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.30.0FAR1-related sequence 2